Mohammad Nazim, PhD

Assistant Professor
Department of Biochemistry
School of Medicine
Member
Center for RNA Science and Therapeutics
School of Medicine

Research Information

Research Interests

Defining the mechanistic interface between post-transcriptional RNA regulation and chromatin regulation that controls transcriptional and epigenetic programs underlying stem cell maintenance, cellular differentiation, tissue development, and disease.

Research Projects

We humans have evolved largely by acquiring diversity in alternative RNA metabolisms, including alternative means of splicing and polyadenylation, rather than acquiring new coding genes. Alternative pre-mRNA splicing regulates the majority of mammalian genes, with more than 95% of multi-exon genes undergoing regulated splicing. This process is fundamental to a wide range of biological functions, including cell proliferation, lineage specification, differentiation, tissue morphogenesis, signaling, and immune responses. By diversifying the proteome, alternative splicing enables the generation of distinct cellular identities and functional states from an otherwise homogeneous genome.

The Nazim Lab investigates how post-transcriptional gene regulation is orchestrated at both the RNA and chromatin levels. We are particularly interested in understanding how alternative RNA splicing influences transcriptional and epigenetic programs in embryonic stem cell maintenance, differentiation, and tissue development. A major focus of the lab is defining how different splice variants of chromatin regulators function during cellular differentiation into distinct lineages, and how errors in RNA splicing contribute to human diseases, including various neurodevelopmental disorders and cancer. Utilizing cell culture systems, genetically engineered mouse models, and modern genomic approaches, we investigate how splicing-driven changes in gene regulation support normal development and how these processes go awry in disease. Our goal is to uncover fundamental principles that connect RNA biology, chromatin regulation, and gene expression in human health and disease.

Publications

Nazim M, Lin C-H, Feng A-C, Xiao W, Yeom K-H, Li M, Daly AE, Tan X, Vu H, Ernst J, Carey MF, Smale ST, and Black DL. Cell Stem Cell. 2024 May 2;31(5):754-771.e6. PMID: 38701759

Nazim M. . Front Mol Neurosci. 2024. 17:1483901. PMID: 39764514

Xiao W, Halabi R, Lin C-H, Nazim M, Yeom K-H, and Black DL. Genes Dev. 2024 Apr 30. PMID: 38688681

Farshadyeganeh P*, Nazim M*, Zhang R, Ohkawara B, Nakajima K, Rahman MA, Nasrin F, Ito M, Takeda JI, Ohe K, Miyasaka Y, Ohno T, Masuda A, Ohno K. . iScience. 2023 Oct 20;26(10):107746. PMID: 37744035 (*contributed equally)

Ohkawara B, Shen X-M, Selcen D, Nazim M, Bril V, Tarnopolsky MA, Brady L, Fukami S, Amato AA, Yis U, Ohno K, Engel AG. JCI Insight. 2020; 5(7): e132023. PMID: 32271162

Nazim M, Nasrin F, Rahman MA. J. Genet. Genet. Eng. 2018. 2(3), pp 26-34.

Nazim M, Masuda A, Rahman MA, Nasrin F, Takeda JI, Ohe K, Ohkawara B, Ito M, Ohno K.Nucleic Acids Res. 2017 Feb 17;45(3):1455- 1468. PMID: 28180311

Ohno K, Rahman MA, Nazim M, Nasrin F, Lin Y, Takeda JI, Masuda A. . J Neurochem. 2017 Aug;142 Suppl 2:64-72. PMID: 28072465

Ahsan KB, Masuda A, Rahman MA, Takeda JI, Nazim M, Ohkawara B, Ito M, Ohno K. Sci Rep. 7(1):10446. PMID: 28874828

Rahman MA, Azuma Y, Nasrin F, Takeda JI, Nazim M, Bin Ahsan K, Masuda A, Engel AG, Ohno K. . Sci Rep. 5:13208. PMID: 26282582

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Education

PhD
Graduate School of Medicine, Nagoya University
Post Doc
David Geffen School of Medicine, University of California, Los Angeles (UCLA)